RAxML Workbench
Version: 1.0
(c) Exelixis Lab.
Contact
- Denis.Krompass@campus.lmu.de
RAxML-EPA:
- S.A. Berger, A. Stamatakis, Evolutionary Placement of Short Sequence Reads. arXiv:0911.2852v1 [q-bio.GN](2009)
RAxML:
- A. Stamatakis, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) btl446
Archaeopteryx Treeviewer:
EDPL:
- Frederick A Matsen, Robin B Kodner and E Virginia Armbrust, pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. arXiv:1003.5943v1 [q-bio.PE]
Hmmer:
- S. R. Eddy., A New Generation of Homology Search Tools Based on Probabilistic Inference. Genome Inform., 23:205-211, 2009.
uclust: